Chapter 1 About

ggChIPvis is designed to re-produce the Profile and Heatmap plots uisng ggplot2 package with more parameter controls and settings. ggChIPvis can accept the data from EnrichedHeatmap::normalizeToMatrix, ChIPseeker::getTagMatrix and deeptools’ computeMatrix output data which allow you re-draw the plot in R session with other graphic modifications.

1.1 Citation

Jun Zhang (2023). ggChIPvis: Profile and Heatmap Visualization by Using ggplot2. https://github.com/junjunlab/ggChIPvis

1.2 Installation

You can install the development version of ggChIPvis:

# install.packages("devtools")
devtools::install_github("junjunlab/ggChIPvis")

# or
remotes::install_github("junjunlab/ggChIPvis")

library(ggChIPvis)

1.3 Example