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RiboProfiler Reference Book

8 Track_plot supplement

Here show some examples for track_plot function.

A simple plot:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'))

Remove trans panel border:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           remove_trans_panel_border = T)

You can also remove all panel borders:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           remove_all_panel_border = T)

Show y axis ticks instead of text range:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           remove_trans_panel_border = T,
           show_y_ticks = T)

Modify details for multiple graph layers:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           remove_trans_panel_border = T,
           geom_line_params = list(size = 1),
           geom_hline_params = list(yintercept = 5,color = "black"),
           geom_ribbon_params = list(alpha = 0.6))

Turn off fixed y axis range by column:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           remove_trans_panel_border = T,
           show_y_ticks = T,
           fixed_col_range = F)

Show x axis:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           show_x_ticks = T)

Remove gene structure panel:

track_plot(plot_type = "interactome",
           signal_data = df_sw,
           gene_order = c('GUS1','ARC1','MES1'),
           sample_order = c('GUS1','MES1','ARC1'),
           line_col = c('GUS1' = '#4883C6','ARC1' = '#AA356A','MES1' = '#D52C30'),
           show_x_ticks = T,
           add_gene_struc = F)